Brapi MCP Server

The 25 tools it gives your agent

Extracted from the project's README - what brapi-mcp-server lets an agent do.

brapi_connect

- Authenticate to a BrAPI v2 server, register it under an alias, and return the orientation envelope

brapi_server_info

- Re-fetch the orientation envelope for a registered alias, optionally refreshing capabilities

brapi_describe_filters

- List valid filter names for an endpoint, for use in any finder's extraFilters

brapi_find_studies

- Find studies by crop, trial type, season, location, or program

brapi_get_study

- Fetch a study with program, trial, and location resolved, plus companion counts

brapi_find_germplasm

- Find germplasm by name, synonym, accession, PUI, crop, or free text

brapi_get_germplasm

- Fetch a germplasm with attributes, direct parents, and companion counts

brapi_walk_pedigree

- Walk ancestry or descendancy as a deduplicated DAG with cycle detection

brapi_find_variables

- Find observation variables by name, trait class, or ontology term, with free-text ranking

brapi_find_observations

- Pull observation records by study, germplasm, variable, season, or unit

brapi_find_images

- Find image metadata by unit, observation, study, ontology term, or MIME type

brapi_get_image

- Fetch up to 5 images inline as image content blocks

show all 25 tools

brapi_find_locations

- Find research stations by country, type, abbreviation, or bounding box

brapi_find_variants

- Find variants by variant set, reference, or genomic region

brapi_find_genotype_calls

- Pull genotype calls through async search, bounded by a deployment pull ceiling

brapi_dataframe_describe

- List dataframes, or describe one with columns, row count, and provenance

brapi_dataframe_query

- Run read-only SQL across dataframes

brapi_dataframe_drop

- _Opt-in._ Drop a dataframe by name

brapi_dataframe_export

- _Opt-in, stdio-only._ Export a dataframe to disk as CSV, Parquet, or JSON

brapi_build_phenotype_matrix

- Build a germplasm × trait matrix from one or more studies as a dataframe

brapi_germplasm_performance

- Per-variable aggregates (n, mean, median, sd, min, max) for one germplasm across its studies

brapi_export_genotype_matrix

- Pivot a variant set's calls into a germplasm × variant matrix, with VCF-lite or PLINK text

brapi_submit_observations

- _Opt-in._ Two-phase observation write: preview validates, apply confirms and writes

brapi_raw_get

- Passthrough to any GET /{path} endpoint no curated tool covers

brapi_raw_search

- Passthrough to any POST /search/{noun} endpoint, with async polling handled