Pubcrawl MCP Server
An MCP server that gives AI assistants access to PubMed, Europe PMC, FDA & UK drug labelling, and ClinicalTrials.gov. It runs locally over stdio via the published package.
People who work with biomedical, literature search and ncbi and want it reachable from Claude, Cursor, VS Code, or another MCP client. The project is written in TypeScript.
VERIFIED ACTIVE
LAST COMMIT 2026-09-29 · ★ 15 · #16 OF 75 MAINTAINED SCIENCE & HEALTH · VERIFIED 2026-09-30
MIT · TypeScript servers · how we verify → /methodology
01 · Install Pubcrawl
before you install - you'll need
NCBI_API_KEY
Environment variables documented in the project's README - it lists which are required and which have defaults.
Claude Code
claude mcp add nickjlamb-pubcrawl -- npx -y @pharmatools/pubcrawl Claude Desktop / Cursor / VS Code - add to config
{
"mcpServers": {
"nickjlamb-pubcrawl": {
"command": "npx",
"args": [
"-y",
"@pharmatools/pubcrawl"
]
}
}
} Same JSON for Cursor. For VS Code, rename the top-level key from `mcpServers` to `servers`.
Using another client? Same JSON, different key
Claude Desktop · mcpServers
Cursor · mcpServers
VS Code · servers
Windsurf · mcpServers
Zed · context_servers
Cline · mcpServers
Roo Code · mcpServers
Continue · mcpServers
LibreChat · mcpServers
Gemini CLI · mcpServers
Codex CLI · mcp_servers
Full setup guides: every client.
02 · Evidence
Security posture
What to check before giving this server access to your agent - from the registry, GitHub, and our own probes. We don't score safety; we show what's verifiable.
runs as local process (stdio) - runs on your machine with your user's permissions
license MIT - declared in the repository
npm package @pharmatools/pubcrawl - the @pharmatools scope differs from the repo owner (nickjlamb); confirm it's the project's official package
registry namespace io.github.nickjlamb is GitHub-verified and matches the repo owner
03 · What Pubcrawl can do
Prose above is summarized from the project's README and registry record - no invented capabilities.
Latest releases
v2.6.2 · 2026-09-28
Dependency security refresh (npm audit fix); server.json synced for the MCP Registry.
v2.6.1 · 2026-09-26
Declare zod as a direct dependency (it was only arriving via the MCP SDK's peer dependency).
v2.6.0 · 2026-09-26
04 · Who maintains Pubcrawl
pubcrawl is maintained by nickjlamb. We track 5 MCP servers from nickjlamb - 5 actively maintained, 29 combined GitHub stars, oldest repo from Feb 2026. Full record: all servers from nickjlamb.
- redacta-mcp Pseudonymise and restore patient identifiers & PII in text - local, HIPAA Safe Harbor mode. ★ 9
- opengate-mcp Check whether an AI answer is grounded in its context - deterministic, no LLM judge. ★ 2
- studydiff Explain why two scientific papers disagree, every claim grounded in a verbatim source quote. ★ 2
05 · Facts
- repository
- github.com/nickjlamb/pubcrawl
- category
- science & health - ranked #16 of 75 actively-maintained science & health servers as of 2026-09-30.
- release cadence
- 6 releases in the last 90 days (latest 2026-09-28)
- registry
- io.github.nickjlamb/pubcrawl (active, first published 2026-02-16 · 4 versions)
- packages
- npm:@pharmatools/pubcrawl
06 · Pubcrawl FAQ
What is Pubcrawl?
An MCP server that gives AI assistants access to PubMed, Europe PMC, FDA & UK drug labelling, and ClinicalTrials.gov. It runs locally over stdio via the published package.
Is Pubcrawl still maintained?
Yes - as of 2026-09-30, its last commit was 2026-09-29 and it shipped 6 releases in the last 90 days. We re-verify nightly.
How do I install Pubcrawl?
Run `npx -y @pharmatools/pubcrawl`. The README documents one environment variable (NCBI_API_KEY) to set first. You can also paste the ready-made client config above.
Does Pubcrawl run locally?
Yes - it's a stdio server: it runs on your machine (via npx) with your user's permissions. Your data stays local unless the server itself calls external APIs.
07 · Alternatives to Pubcrawl
Alternatives to Pubcrawl
Maintained science & health servers if Pubcrawl isn't the fit.
- Arxiv MCP Server (blazickjp) Search arXiv papers, download full text, semantic search, citation graphs, and alerts via MCP. ★ 3,183 · 2026-09-30
- Paper Banana Generate academic diagrams and statistical plots from text using multi-agent AI. ★ 2,387 · 2026-09-17
- Pyscn Python code analysis for AI agents: complexity, dead code, clones, coupling, and a health score. ★ 1,085 · 2026-09-28
- Whoop MCP server for WHOOP health data - recovery, sleep, workouts, cycles, and trends. ★ 161 · 2026-09-29
- Pubmed MCP Server Search PubMed/Europe PMC, fetch articles and full text (PMC/EPMC/Unpaywall), citations, MeSH terms. ★ 153 · 2026-09-28
- FHIR MCP Server MCP server providing seamless access to FHIR APIs for AI tools and healthcare applications ★ 137 · 2026-09-30
More science & health MCP servers · Redacta MCP · DICOM/HL7/FHIR Interoperability MCP Server · Omophub MCP · Maccabi Health · Kaiord
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